Public Member Functions | Protected Member Functions | Friends | List of all members
biogears::SELiquidCompartmentGraph Class Reference

#include <SELiquidCompartmentGraph.h>

Inheritance diagram for biogears::SELiquidCompartmentGraph:
Inheritance graph
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Public Member Functions

virtual ~SELiquidCompartmentGraph () override
 
void AddGraph (SELiquidCompartmentGraph &graph)
 
virtual bool Load (const CDM::LiquidCompartmentGraphData &in, SECompartmentManager &cmptMgr)
 
virtual CDM::LiquidCompartmentGraphData * Unload ()
 
- Public Member Functions inherited from biogears::SECompartmentTransportGraph< SELiquidTransportGraph, SELiquidTransportVertex, SELiquidTransportEdge, SELiquidCompartment, SELiquidCompartmentLink >
 SECompartmentTransportGraph (const char *name, Logger *logger)
 
 SECompartmentTransportGraph (const std::string &name, Logger *logger)
 
virtual ~SECompartmentTransportGraph ()
 
virtual void Clear () override
 
virtual std::string GetName () const override
 
virtual const char * GetName_cStr () const override
 
virtual void StateChange ()
 
- Public Member Functions inherited from biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
virtual ~SECompartmentGraph ()
 
virtual void AddCompartment (CompartmentType &cmpt)
 
virtual CompartmentType * GetCompartment (const char *name)
 
virtual CompartmentType * GetCompartment (const std::string &name)
 
virtual const CompartmentType * GetCompartment (const char *name) const
 
virtual const CompartmentType * GetCompartment (const std::string &name) const
 
virtual const std::vector< CompartmentType * > & GetCompartments () const
 
virtual void RemoveCompartment (const CompartmentType &cmpt)
 
virtual void RemoveCompartment (const char *name)
 
virtual void RemoveCompartment (const std::string &name)
 
virtual CompartmentLinkType * GetLink (const char *name)
 
virtual CompartmentLinkType * GetLink (const std::string &name)
 
virtual const CompartmentLinkType * GetLink (const char *name) const
 
virtual const CompartmentLinkType * GetLink (const std::string &name) const
 
virtual void AddLink (CompartmentLinkType &link)
 
virtual const std::vector< CompartmentLinkType * > & GetLinks () const
 
virtual void RemoveLink (const CompartmentLinkType &link)
 
virtual void RemoveLink (const char *name)
 
virtual void RemoveLink (const std::string &name)
 
- Public Member Functions inherited from biogears::Loggable
 Loggable ()
 
 Loggable (Logger *log)
 
virtual ~Loggable ()
 
virtual Logger * GetLogger () const
 

Protected Member Functions

 SELiquidCompartmentGraph (const char *name, Logger *logger)
 
 SELiquidCompartmentGraph (const std::string &name, Logger *logger)
 
virtual void Unload (CDM::LiquidCompartmentGraphData &data)
 
void BalanceByIntensive () override
 
- Protected Member Functions inherited from biogears::SECompartmentTransportGraph< SELiquidTransportGraph, SELiquidTransportVertex, SELiquidTransportEdge, SELiquidCompartment, SELiquidCompartmentLink >
virtual size_t GetVertexIndex (const GraphVertexType &v) const override
 
virtual const std::vector< GraphVertexType * > & GetVerticies () const override
 
virtual const std::vector< GraphEdgeType * > * GetSourceEdges (const GraphVertexType &v) const override
 
virtual const std::vector< GraphEdgeType * > * GetTargetEdges (const GraphVertexType &v) const override
 
- Protected Member Functions inherited from biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
 SECompartmentGraph (const std::string &name, Logger *logger)
 
 SECompartmentGraph (const char *name, Logger *logger)
 
- Protected Member Functions inherited from biogears::Loggable
virtual void Debug (const char *msg, const char *origin="") const
 
virtual void Debug (const std::string &msg, const std::string &origin=empty) const
 
virtual void Debug (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Info (const char *msg, const char *origin="") const
 
virtual void Info (const std::string &msg, const std::string &origin=empty) const
 
virtual void Info (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Warning (const char *msg, const char *origin="") const
 
virtual void Warning (const std::string &msg, const std::string &origin=empty) const
 
virtual void Warning (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Error (const char *msg, const char *origin="") const
 
virtual void Error (const std::string msg, const std::string origin=empty) const
 
virtual void Error (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Fatal (const char *msg, const char *origin="") const
 
virtual void Fatal (const std::string &msg, const std::string &origin=empty) const
 
virtual void Fatal (std::ostream &msg, const std::string &origin=empty) const
 

Friends

class SECompartmentManager
 

Additional Inherited Members

- Static Public Attributes inherited from biogears::Loggable
static const std::string empty
 
static const char * empty_cStr
 
- Protected Attributes inherited from biogears::SECompartmentTransportGraph< SELiquidTransportGraph, SELiquidTransportVertex, SELiquidTransportEdge, SELiquidCompartment, SELiquidCompartmentLink >
std::vector< GraphVertexType * > m_Verticies
 
std::map< const GraphVertexType *, size_t > m_VertexIndicies
 
std::map< const GraphVertexType *, std::vector< GraphEdgeType * > * > m_SourceEdgeMap
 
std::map< const GraphVertexType *, std::vector< GraphEdgeType * > * > m_TargetEdgeMap
 
- Protected Attributes inherited from biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
std::string m_Name
 
std::vector< CompartmentType * > m_Compartments
 
std::vector< CompartmentLinkType * > m_CompartmentLinks
 
- Protected Attributes inherited from biogears::Loggable
Logger * m_Logger
 

Constructor & Destructor Documentation

biogears::SELiquidCompartmentGraph::SELiquidCompartmentGraph ( const char *  name,
Logger *  logger 
)
protected
biogears::SELiquidCompartmentGraph::SELiquidCompartmentGraph ( const std::string &  name,
Logger *  logger 
)
protected
biogears::SELiquidCompartmentGraph::~SELiquidCompartmentGraph ( )
overridevirtual

Member Function Documentation

void biogears::SELiquidCompartmentGraph::AddGraph ( SELiquidCompartmentGraph &  graph)
void biogears::SELiquidCompartmentGraph::BalanceByIntensive ( )
overrideprotectedvirtual

Implements biogears::SECompartmentTransportGraph< SELiquidTransportGraph, SELiquidTransportVertex, SELiquidTransportEdge, SELiquidCompartment, SELiquidCompartmentLink >.

bool biogears::SELiquidCompartmentGraph::Load ( const CDM::LiquidCompartmentGraphData &  in,
SECompartmentManager &  cmptMgr 
)
virtual
CDM::LiquidCompartmentGraphData * biogears::SELiquidCompartmentGraph::Unload ( )
virtual
void biogears::SELiquidCompartmentGraph::Unload ( CDM::LiquidCompartmentGraphData &  data)
protectedvirtual

Friends And Related Function Documentation

friend class SECompartmentManager
friend