#include <SECompartmentNodes.h>

Inheritance diagram for biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >:

Inheritance graph

[legend]

Public Member Functions
	SECompartmentNodes (Logger *logger)

virtual	~SECompartmentNodes ()

virtual void	Clear ()

virtual void	StateChange ()

virtual bool	HasMapping () const

virtual std::vector< NodeType * > &	GetNodes ()

virtual void	RemoveNode (NodeType &node)

virtual void	MapNode (NodeType &node)

virtual bool	HasQuantity () const

virtual QuantityScalar &	GetQuantity ()

virtual double	GetQuantity (const QuantityUnit &unit) const

virtual bool	HasPotential () const

virtual PotentialScalar &	GetPotential ()

virtual double	GetPotential (const PotentialUnit &unit) const

Public Member Functions inherited from biogears::Loggable
	Loggable ()

	Loggable (Logger *log)

virtual	~Loggable ()

virtual Logger *	GetLogger () const

Protected Member Functions
void	SortNode (NodeType &node)

virtual const std::vector< NodeType * > &	GetAllNodes () const

virtual const std::vector< NodeType * > &	GetQuantityNodes () const

Protected Member Functions inherited from biogears::Loggable
virtual void	Debug (const char msg, const char origin="") const

virtual void	Debug (const std::string &msg, const std::string &origin=empty) const

virtual void	Debug (std::ostream &msg, const std::string &origin=empty) const

virtual void	Info (const char msg, const char origin="") const

virtual void	Info (const std::string &msg, const std::string &origin=empty) const

virtual void	Info (std::ostream &msg, const std::string &origin=empty) const

virtual void	Warning (const char msg, const char origin="") const

virtual void	Warning (const std::string &msg, const std::string &origin=empty) const

virtual void	Warning (std::ostream &msg, const std::string &origin=empty) const

virtual void	Error (const char msg, const char origin="") const

virtual void	Error (const std::string msg, const std::string origin=empty) const

virtual void	Error (std::ostream &msg, const std::string &origin=empty) const

virtual void	Fatal (const char msg, const char origin="") const

virtual void	Fatal (const std::string &msg, const std::string &origin=empty) const

virtual void	Fatal (std::ostream &msg, const std::string &origin=empty) const

Protected Attributes
std::vector< NodeType * >	m_QuantityNodes

std::vector< NodeType * >	m_AllNodes

QuantityScalar *	m_Quantity

PotentialScalar *	m_Potential

Protected Attributes inherited from biogears::Loggable
Logger *	m_Logger

Additional Inherited Members
Static Public Attributes inherited from biogears::Loggable
static const std::string	empty

static const char *	empty_cStr

Constructor & Destructor Documentation

template<COMPARTMENT_NODE_TEMPLATE >

biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::SECompartmentNodes ( Logger * logger )

template<COMPARTMENT_NODE_TEMPLATE >

virtual biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::~SECompartmentNodes ( )

virtual

Member Function Documentation

template<COMPARTMENT_NODE_TEMPLATE >

virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::Clear ( )

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual const std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetAllNodes ( ) const

inlineprotectedvirtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetNodes ( )

inlinevirtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual PotentialScalar& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetPotential ( )

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual double biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetPotential ( const PotentialUnit & unit ) const

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual QuantityScalar& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantity ( )

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual double biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantity ( const QuantityUnit & unit ) const

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual const std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantityNodes ( ) const

inlineprotectedvirtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasMapping ( ) const

inlinevirtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasPotential ( ) const

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasQuantity ( ) const

inlinevirtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::MapNode ( NodeType & node )

virtual

template<COMPARTMENT_NODE_TEMPLATE >

virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::RemoveNode ( NodeType & node )

virtual

template<COMPARTMENT_NODE_TEMPLATE >

void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::SortNode ( NodeType & node )

protected

template<COMPARTMENT_NODE_TEMPLATE >

virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::StateChange ( )

virtual

Member Data Documentation

template<COMPARTMENT_NODE_TEMPLATE >

std::vector<NodeType*> biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_AllNodes

protected

template<COMPARTMENT_NODE_TEMPLATE >

PotentialScalar* biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_Potential

protected

template<COMPARTMENT_NODE_TEMPLATE >

QuantityScalar* biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_Quantity

protected

template<COMPARTMENT_NODE_TEMPLATE >

std::vector<NodeType*> biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_QuantityNodes

protected