biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE > Class Template Reference

#include <SECompartmentNodes.h>

Inheritance diagram for biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >:

Public Member Functions

 SECompartmentNodes (Logger *logger)
 
virtual ~SECompartmentNodes ()
 
virtual void Clear ()
 
virtual void StateChange ()
 
virtual bool HasMapping () const
 
virtual std::vector< NodeType * > & GetNodes ()
 
virtual void RemoveNode (NodeType &node)
 
virtual void MapNode (NodeType &node)
 
virtual bool HasQuantity () const
 
virtual QuantityScalar & GetQuantity ()
 
virtual double GetQuantity (const QuantityUnit &unit) const
 
virtual bool HasPotential () const
 
virtual PotentialScalar & GetPotential ()
 
virtual double GetPotential (const PotentialUnit &unit) const
 
- Public Member Functions inherited from biogears::Loggable
 Loggable ()
 
 Loggable (Logger *log)
 
virtual ~Loggable ()
 
virtual LoggerGetLogger () const
 

Protected Member Functions

void SortNode (NodeType &node)
 
virtual const std::vector< NodeType * > & GetAllNodes () const
 
virtual const std::vector< NodeType * > & GetQuantityNodes () const
 
- Protected Member Functions inherited from biogears::Loggable
virtual void Debug (const char *msg, const char *origin="") const
 
virtual void Debug (const std::string &msg, const std::string &origin=empty) const
 
virtual void Debug (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Info (const char *msg, const char *origin="") const
 
virtual void Info (const std::string &msg, const std::string &origin=empty) const
 
virtual void Info (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Warning (const char *msg, const char *origin="") const
 
virtual void Warning (const std::string &msg, const std::string &origin=empty) const
 
virtual void Warning (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Error (const char *msg, const char *origin="") const
 
virtual void Error (const std::string msg, const std::string origin=empty) const
 
virtual void Error (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Fatal (const char *msg, const char *origin="") const
 
virtual void Fatal (const std::string &msg, const std::string &origin=empty) const
 
virtual void Fatal (std::ostream &msg, const std::string &origin=empty) const
 

Protected Attributes

std::vector< NodeType * > m_QuantityNodes
 
std::vector< NodeType * > m_AllNodes
 
QuantityScalar * m_Quantity
 
PotentialScalar * m_Potential
 
- Protected Attributes inherited from biogears::Loggable
Loggerm_Logger
 

Additional Inherited Members

- Static Public Attributes inherited from biogears::Loggable
static const std::string empty
 
static const char * empty_cStr
 

Constructor & Destructor Documentation

template<COMPARTMENT_NODE_TEMPLATE >
biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::SECompartmentNodes ( Logger logger)
template<COMPARTMENT_NODE_TEMPLATE >
virtual biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::~SECompartmentNodes ( )
virtual

Member Function Documentation

template<COMPARTMENT_NODE_TEMPLATE >
virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::Clear ( )
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual const std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetAllNodes ( ) const
inlineprotectedvirtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetNodes ( )
inlinevirtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual PotentialScalar& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetPotential ( )
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual double biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetPotential ( const PotentialUnit &  unit) const
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual QuantityScalar& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantity ( )
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual double biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantity ( const QuantityUnit &  unit) const
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual const std::vector<NodeType*>& biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::GetQuantityNodes ( ) const
inlineprotectedvirtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasMapping ( ) const
inlinevirtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasPotential ( ) const
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual bool biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::HasQuantity ( ) const
inlinevirtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::MapNode ( NodeType &  node)
virtual
template<COMPARTMENT_NODE_TEMPLATE >
virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::RemoveNode ( NodeType &  node)
virtual
template<COMPARTMENT_NODE_TEMPLATE >
void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::SortNode ( NodeType &  node)
protected
template<COMPARTMENT_NODE_TEMPLATE >
virtual void biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::StateChange ( )
virtual

Member Data Documentation

template<COMPARTMENT_NODE_TEMPLATE >
std::vector<NodeType*> biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_AllNodes
protected
template<COMPARTMENT_NODE_TEMPLATE >
PotentialScalar* biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_Potential
protected
template<COMPARTMENT_NODE_TEMPLATE >
QuantityScalar* biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_Quantity
protected
template<COMPARTMENT_NODE_TEMPLATE >
std::vector<NodeType*> biogears::SECompartmentNodes< COMPARTMENT_NODE_TEMPLATE >::m_QuantityNodes
protected