| AbsorptionCarbs(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AbsorptionFat(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AbsorptionProtein(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AbsorptionTest(const std::string &sOutputDirectory, MealType=None) | biogears::BioGearsEngineTest | protected |
| AcidBaseBloodGasTest(BioGears &bg, bloodType compartment, SETestSuite &testSuite) | biogears::BioGearsEngineTest | protected |
| AcidBaseBloodGasTests(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseExtremeTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseFeedbackTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseFiveCompartmentTestWithDiffusion(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseFiveCompartmentTestWithProductionConsumptionAndDiffusion(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseFourCompartmentTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseFourCompartmentTestWithProductionConsumption(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseLimitsTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AcidBaseMathTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| activeDiffusion | biogears::BioGearsEngineTest | protected |
| AcuteInflammationTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| AerosolTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AlbuminTransport(SELiquidCompartment &from, SELiquidCompartment &to, SEFluidCircuitPath &flowPath, SESubstance &alb, double dt_min, double tissueIntegrity) | biogears::BioGearsEngineTest | protected |
| AlveolarCarbonDioxideDiffusionTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| AlveolarOxygenDiffusionTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| AnaerobicExerciseTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| AnesthesiaMachineCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| AnesthesiaMachineCircuitAndTransportTest(RespiratoryConfiguration config, const std::string &sTestDirectory) | biogears::BioGearsEngineTest | protected |
| AnesthesiaMachineSolo enum value | biogears::BioGearsEngineTest | protected |
| ARTERIAL enum value | biogears::BioGearsEngineTest | protected |
| Balanced enum value | biogears::BioGearsEngineTest | |
| bgeMap | biogears::BioGearsEngineTest | protected |
| BioGearsEngineTest() | biogears::BioGearsEngineTest | |
| BioGearsEngineTest(Logger *logger) | biogears::BioGearsEngineTest | |
| bloodType enum name | biogears::BioGearsEngineTest | protected |
| BrainInjuryTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| CAPILLARY enum value | biogears::BioGearsEngineTest | protected |
| CarbsOnly enum value | biogears::BioGearsEngineTest | |
| CardiovascularAndRenalCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CardiovascularAndTissueCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CardiovascularBloodGasesTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CardiovascularCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CardiovascularCircuitAndTransportTest(CardiovascularDriver driverType, double complianceScale, double resistanceScale, double volumeScale, double heartRate_bpm, double sysRes, double sysComp, double aortaRes, double aortaComp, double rightHeartRes, double venaCavaComp, bool connectTissue, bool connectRenal, bool balanceBloodgases, const std::string &sTestDirectory, const std::string &sTestName, bool breakOutResults) | biogears::BioGearsEngineTest | protected |
| CardiovascularCircuitScaleTests(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CardiovascularDriver enum name | biogears::BioGearsEngineTest | protected |
| CardiovascularTissueAndRenalCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CombinedInternalAndEnvironmentSkinTempDropCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| CombinedInternalAndEnvironmentVariableBMRandTemperatureCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| ConditionCombinations(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| CUSTOM enum value | biogears::BioGearsEngineTest | protected |
| CustomNutrientKineticsTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| Debug(const char *msg, const char *origin="") const | biogears::Loggable | privatevirtual |
| Debug(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| Debug(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| DepositionFractionTest(SETestSuite &suite, SESubstance &substance, double expectedMouthDepFrac, double expectedCarinaDepFrac, double expectedDeadSpaceDepFrac, double expectedAlveoliDepFrac) | biogears::BioGearsEngineTest | protected |
| DiffusionClearanceExcretionTests(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| DigestionCarbs(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| DigestionFat(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| DigestionMixed(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| DigestionProtein(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| DigestionTest(const std::string &sOutputDirectory, MealType=None) | biogears::BioGearsEngineTest | protected |
| DistributeMass(SETestSuite &testSuite) | biogears::BioGearsEngineTest | protected |
| Down(double y, double x, double n) | biogears::BioGearsEngineTest | protected |
| EigenDiffusionTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| empty | biogears::Loggable | privatestatic |
| empty_cStr | biogears::Loggable | privatestatic |
| EnvironmentISO7730ComparisonTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| EnvironmentVariableTemperatureCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| Error(const char *msg, const char *origin="") const | biogears::Loggable | privatevirtual |
| Error(const std::string msg, const std::string origin=empty) const | biogears::Loggable | privatevirtual |
| Error(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| FacilitatedDiffusionTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| Fatal(const char *msg, const char *origin="") const | biogears::Loggable | privatevirtual |
| Fatal(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| Fatal(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| FatOnly enum value | biogears::BioGearsEngineTest | |
| FillFunctionMap() | biogears::BioGearsEngineTest | |
| FiveCompartmentTestWithActiveDiffusion(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| FiveCompartmentTestWithDiffusion(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| FourCompartmentTest(bool usingAcidBase, bool usingProductionConsumption, bool usingDiffusion, bool activeDiffusion, const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | protected |
| FourCompartmentTestSimple(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| FullStoresFastingTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| GenericClearanceTest(SETestSuite &testSuite) | biogears::BioGearsEngineTest | protected |
| GenericExcretionTest(SETestSuite &testSuite) | biogears::BioGearsEngineTest | protected |
| GetLogger() const | biogears::Loggable | privatevirtual |
| Heart enum value | biogears::BioGearsEngineTest | protected |
| HormoneStabilityTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| Info(const char *msg, const char *origin="") const | biogears::Loggable | privatevirtual |
| Info(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| Info(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| InhalerState(PhysiologyEngine *bg, HowToTracker &tracker) | biogears::BioGearsEngineTest | protected |
| InjectSuccsState(PhysiologyEngine *bg, HowToTracker &tracker, const SESubstance &succs) | biogears::BioGearsEngineTest | protected |
| InternalTemperatureVariableBMRCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| InternalTemperatureVariableCoreCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| InternalTemperatureVariableSkinCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| LipogenesisTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| Loggable() | biogears::Loggable | private |
| Loggable(Logger *log) | biogears::Loggable | private |
| m_CardiacOutput | biogears::BioGearsEngineTest | protected |
| m_Diastolic | biogears::BioGearsEngineTest | protected |
| m_Logger | biogears::Loggable | private |
| m_MeanAortaPressure | biogears::BioGearsEngineTest | protected |
| m_MeanCVPressure | biogears::BioGearsEngineTest | protected |
| m_Pulse | biogears::BioGearsEngineTest | protected |
| m_ss | biogears::BioGearsEngineTest | protected |
| m_Systolic | biogears::BioGearsEngineTest | protected |
| MealType enum name | biogears::BioGearsEngineTest | |
| METABOLIC_ACIDOSIS enum value | biogears::BioGearsEngineTest | protected |
| METABOLIC_ALKALOSIS enum value | biogears::BioGearsEngineTest | protected |
| MultiEngineTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| myLogger | biogears::BioGearsEngineTest | protected |
| None enum value | biogears::BioGearsEngineTest | |
| NutrientKineticsTest(bool usingAbsorption, bool usingDynamicHormones, bool usingGlycogen, bool usingProteinStorage, bool usingFatStorage, bool fullStores, bool useDiffusion, bool useConsumption, bool usingLipogenesis, bool usingGluconeogenesis, bool isAnaerobic, double exerciseWork_W, const std::string &sOutputDirectory, double testDuration_hr, MealType mealType=None, std::string testName="Custom") | biogears::BioGearsEngineTest | protected |
| PerfusionLimitedDiffusionTest(SETestSuite &testSuite) | biogears::BioGearsEngineTest | protected |
| ProduceAndConsume(double baseEnergyRequested_kcal, double exerciseEnergyRequested_kcal, bool isAnaerobic, BioGears &bg, double deltaT_s, double brainFlowFraction, double &muscleGlycogen_g, double &CO2Produced_mol, double &O2Consumed_mol, double &brainEnergyDeficit_kcal, double &muscleEnergyDeficit_kcal, double &lactateFromGlucose_g, DataTrack &trk) | biogears::BioGearsEngineTest | protected |
| ProteinGluconeogenesisTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| ProteinOnly enum value | biogears::BioGearsEngineTest | |
| RenalCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RenalFeedback enum name | biogears::BioGearsEngineTest | protected |
| RenalFeedbackTest(RenalFeedback feedback, const std::string &sTestDirectory, const std::string &sTestName) | biogears::BioGearsEngineTest | protected |
| RenalSecretionTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RenalSystems enum name | biogears::BioGearsEngineTest | protected |
| RenalSystemTest(RenalSystems systemtest, const std::string &sTestDirectory, const std::string &sTestName) | biogears::BioGearsEngineTest | protected |
| RenalTGFandUPRFeedbackTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RenalTGFFeedbackTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RenalUrinateTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RESPIRATORY_ACIDOSIS enum value | biogears::BioGearsEngineTest | protected |
| RESPIRATORY_ALKALOSIS enum value | biogears::BioGearsEngineTest | protected |
| RespiratoryCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RespiratoryCircuitAndTransportTest(RespiratoryConfiguration config, const std::string &sTestDirectory) | biogears::BioGearsEngineTest | protected |
| RespiratoryConfiguration enum name | biogears::BioGearsEngineTest | protected |
| RespiratoryDriverTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RespiratorySolo enum value | biogears::BioGearsEngineTest | protected |
| RespiratoryWithAnesthesiaMachine enum value | biogears::BioGearsEngineTest | protected |
| RespiratoryWithAnesthesiaMachineCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RespiratoryWithInhaler enum value | biogears::BioGearsEngineTest | protected |
| RespiratoryWithInhalerCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RespiratoryWithMechanicalVentilator enum value | biogears::BioGearsEngineTest | protected |
| RespiratoryWithMechanicalVentilatorCircuitAndTransportTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| RunTest(const std::string &testName, const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| Secretion enum value | biogears::BioGearsEngineTest | protected |
| SerializationTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| Sinusoid enum value | biogears::BioGearsEngineTest | protected |
| SinusoidHeartDriver(double time_s, double heartRate_s, double &lHeartElastance, double &rHeartElastance) | biogears::BioGearsEngineTest | protected |
| SizeIndependentDepositionEfficencyCoefficientsTest(SETestSuite &suite, SESubstance &substance, double expectedMouthCoeff, double expectedCarinaCoeff, double expectedDeadSpaceCoeff, double expectedAlveoliCoeff) | biogears::BioGearsEngineTest | protected |
| SolverSpeedTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| StarvingKetogenesisTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| StorageTest(const std::string &sOutputDirectory) | biogears::BioGearsEngineTest | |
| testFunction typedef | biogears::BioGearsEngineTest | protected |
| testMap typedef | biogears::BioGearsEngineTest | protected |
| TGF enum value | biogears::BioGearsEngineTest | protected |
| TGFandUPR enum value | biogears::BioGearsEngineTest | protected |
| TissueCombinedTransportTest(const std::string &rptDirectory) | biogears::BioGearsEngineTest | |
| TuneCardiovascularCircuitTest(const std::string &sTestDirectory) | biogears::BioGearsEngineTest | |
| TuneCardiovascularCircuitTest(SETestSuite &testSuite, const std::string &sTestDirectory, const std::string &sTestName, SEPatient &patient) | biogears::BioGearsEngineTest | protected |
| Up1(double y, double x, double n) | biogears::BioGearsEngineTest | protected |
| Up2(double y, double x, double n) | biogears::BioGearsEngineTest | protected |
| UpdateOncoticPressure(SEScalarMassPerVolume &albVas, SEScalarMassPerVolume &albExtra, SEFluidCircuitPath &plasma, SEFluidCircuitPath &inter) | biogears::BioGearsEngineTest | protected |
| Urinating enum value | biogears::BioGearsEngineTest | protected |
| usingAcidBase | biogears::BioGearsEngineTest | protected |
| usingDiffusion | biogears::BioGearsEngineTest | protected |
| usingProductionConsumption | biogears::BioGearsEngineTest | protected |
| VENOUS enum value | biogears::BioGearsEngineTest | protected |
| Warning(const char *msg, const char *origin="") const | biogears::Loggable | privatevirtual |
| Warning(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| Warning(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | privatevirtual |
| ~BioGearsEngineTest() | biogears::BioGearsEngineTest | virtual |
| ~Loggable() | biogears::Loggable | privatevirtual |
