| AddChild(SELiquidCompartment &child) | biogears::SELiquidCompartment | virtual |
| AddLink(LinkType &link) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| Balance(BalanceLiquidBy by) | biogears::SELiquidCompartment | virtual |
| CalculateInFlow_mL_Per_s() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protectedvirtual |
| CalculateOutFlow_mL_Per_s() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protectedvirtual |
| Clear() override | biogears::SELiquidCompartment | virtual |
| CreateSubstanceQuantity(SESubstance &substance) | biogears::SELiquidCompartment | protectedvirtual |
| Debug(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Debug(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Debug(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| empty | biogears::Loggable | static |
| empty_cStr | biogears::Loggable | static |
| Error(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Error(const std::string msg, const std::string origin=empty) const | biogears::Loggable | protectedvirtual |
| Error(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Fatal(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| FindLeaves(CompartmentType &cmpt, std::vector< CompartmentType * > &leaves) | biogears::SECompartment | inlinestatic |
| GetChildren() | biogears::SELiquidCompartment | inlinevirtual |
| GetInFlow() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetInFlow(const VolumePerTimeUnit &unit) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetLeaves() | biogears::SELiquidCompartment | inlinevirtual |
| GetLinks() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetLogger() const | biogears::Loggable | virtual |
| GetName() const override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetName_cStr() const override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetNodeMapping() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlinevirtual |
| GetOutFlow() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetOutFlow(const VolumePerTimeUnit &unit) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetPH() | biogears::SELiquidCompartment | virtual |
| GetPH() const | biogears::SELiquidCompartment | virtual |
| GetPressure() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetPressure(const PressureUnit &unit) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetQuantity() override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlineprotectedvirtual |
| GetScalar(const char *name) override | biogears::SELiquidCompartment | virtual |
| GetScalar(const std::string &name) override | biogears::SELiquidCompartment | virtual |
| GetSubstanceQuantities() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetSubstanceQuantity(const SESubstance &substance) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetTransportSubstances() override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlineprotectedvirtual |
| GetVolume() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetVolume(const VolumeUnit &unit) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| GetWaterVolumeFraction() | biogears::SELiquidCompartment | virtual |
| GetWaterVolumeFraction() const | biogears::SELiquidCompartment | virtual |
| HasChild(const char *name) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasChild(const std::string &name) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasChildren() const override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlinevirtual |
| HasInFlow() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasNodeMapping() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlinevirtual |
| HasOutFlow() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasPH() const | biogears::SELiquidCompartment | virtual |
| HasPressure() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasQuantity() const override | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | inlineprotectedvirtual |
| HasSubstanceQuantities() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasSubstanceQuantity(const SESubstance &substance) const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasVolume() const | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| HasWaterVolumeFraction() const | biogears::SELiquidCompartment | virtual |
| Info(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Info(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Info(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Load(const CDM::LiquidCompartmentData &in, SESubstanceManager &subMgr, SECircuitManager *circuits=nullptr) | biogears::SELiquidCompartment | virtual |
| SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >::Load(const CDM::FluidCompartmentData &in, SECircuitManager *circuits=nullptr) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| biogears::SECompartment::Load(const CDM::CompartmentData &in, SECircuitManager *circuits=nullptr) | biogears::SECompartment | virtual |
| Loggable() | biogears::Loggable | |
| Loggable(Logger *log) | biogears::Loggable | |
| m_Children | biogears::SELiquidCompartment | protected |
| m_FluidChildren | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_IncomingLinks | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_InFlow | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_Leaves | biogears::SELiquidCompartment | protected |
| m_Links | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_Logger | biogears::Loggable | protected |
| m_Name | biogears::SECompartment | protected |
| m_Nodes | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_OutFlow | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_OutgoingLinks | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_pH | biogears::SELiquidCompartment | protected |
| m_Pressure | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_SubstanceQuantities | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_TransportSubstances | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_Volume | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| m_WaterVolumeFraction | biogears::SELiquidCompartment | protected |
| MapNode(SEFluidCircuitNode &node) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| RemoveLink(LinkType &link) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| RemoveLinks() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| RemoveSubstanceQuantity(const SESubstance &substance) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protectedvirtual |
| SECompartment(const char *name, Logger *logger) | biogears::SECompartment | protected |
| SECompartment(const std::string &name, Logger *logger) | biogears::SECompartment | protected |
| SECompartmentManager class | biogears::SELiquidCompartment | friend |
| SEFluidCompartment(const char *name, Logger *logger) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| SEFluidCompartment(const std::string &name, Logger *logger) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protected |
| SELiquidCompartment(const char *name, Logger *logger) | biogears::SELiquidCompartment | protected |
| SELiquidCompartment(const std::string &name, Logger *logger) | biogears::SELiquidCompartment | protected |
| SELiquidSubstanceQuantity class | biogears::SELiquidCompartment | friend |
| SETissueCompartment class | biogears::SELiquidCompartment | friend |
| StateChange() override | biogears::SELiquidCompartment | virtual |
| Unload() override | biogears::SELiquidCompartment | virtual |
| Unload(CDM::LiquidCompartmentData &data) | biogears::SELiquidCompartment | protectedvirtual |
| SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >::Unload(CDM::FluidCompartmentData &data) | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | protectedvirtual |
| biogears::SECompartment::Unload(CDM::CompartmentData &data) | biogears::SECompartment | protectedvirtual |
| Warning(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Warning(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Warning(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| ZeroSubstanceQuantities() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| ~Loggable() | biogears::Loggable | virtual |
| ~SECompartment() override | biogears::SECompartment | virtual |
| ~SEFluidCompartment() | biogears::SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity > | virtual |
| ~SELiquidCompartment() | biogears::SELiquidCompartment | virtual |
