AddChild(SEGasCompartment &child) | biogears::SEGasCompartment | virtual |
AddLink(LinkType &link) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
Balance(BalanceGasBy by) | biogears::SEGasCompartment | virtual |
CalculateInFlow_mL_Per_s() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protectedvirtual |
CalculateOutFlow_mL_Per_s() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protectedvirtual |
Clear() override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
CreateSubstanceQuantity(SESubstance &substance) | biogears::SEGasCompartment | protectedvirtual |
Debug(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
Debug(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Debug(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
empty | biogears::Loggable | static |
empty_cStr | biogears::Loggable | static |
Error(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
Error(const std::string msg, const std::string origin=empty) const | biogears::Loggable | protectedvirtual |
Error(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Fatal(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
Fatal(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Fatal(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
FindLeaves(CompartmentType &cmpt, std::vector< CompartmentType * > &leaves) | biogears::SECompartment | inlinestatic |
GetChildren() | biogears::SEGasCompartment | inlinevirtual |
GetInFlow() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetInFlow(const VolumePerTimeUnit &unit) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetLeaves() | biogears::SEGasCompartment | inlinevirtual |
GetLinks() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetLogger() const | biogears::Loggable | virtual |
GetName() const override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetName_cStr() const override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetNodeMapping() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlinevirtual |
GetOutFlow() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetOutFlow(const VolumePerTimeUnit &unit) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetPressure() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetPressure(const PressureUnit &unit) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetQuantity() override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlineprotectedvirtual |
GetScalar(const char *name) override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetScalar(const std::string &name) override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetSubstanceQuantities() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetSubstanceQuantity(const SESubstance &substance) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetTransportSubstances() override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlineprotectedvirtual |
GetVolume() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
GetVolume(const VolumeUnit &unit) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasChild(const char *name) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasChild(const std::string &name) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasChildren() const override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlinevirtual |
HasInFlow() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasNodeMapping() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlinevirtual |
HasOutFlow() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasPressure() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasQuantity() const override | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | inlineprotectedvirtual |
HasSubstanceQuantities() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasSubstanceQuantity(const SESubstance &substance) const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
HasVolume() const | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
Info(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
Info(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Info(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Load(const CDM::GasCompartmentData &in, SESubstanceManager &subMgr, SECircuitManager *circuits=nullptr) | biogears::SEGasCompartment | virtual |
SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >::Load(const CDM::FluidCompartmentData &in, SECircuitManager *circuits=nullptr) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
biogears::SECompartment::Load(const CDM::CompartmentData &in, SECircuitManager *circuits=nullptr) | biogears::SECompartment | virtual |
Loggable() | biogears::Loggable | |
Loggable(Logger *log) | biogears::Loggable | |
m_Children | biogears::SEGasCompartment | protected |
m_FluidChildren | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_IncomingLinks | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_InFlow | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_Leaves | biogears::SEGasCompartment | protected |
m_Links | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_Logger | biogears::Loggable | protected |
m_Name | biogears::SECompartment | protected |
m_Nodes | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_OutFlow | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_OutgoingLinks | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_Pressure | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_SubstanceQuantities | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_TransportSubstances | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
m_Volume | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
MapNode(SEFluidCircuitNode &node) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
RemoveLink(LinkType &link) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
RemoveLinks() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
RemoveSubstanceQuantity(const SESubstance &substance) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protectedvirtual |
SECompartment(const char *name, Logger *logger) | biogears::SECompartment | protected |
SECompartment(const std::string &name, Logger *logger) | biogears::SECompartment | protected |
SECompartmentManager class | biogears::SEGasCompartment | friend |
SEFluidCompartment(const char *name, Logger *logger) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
SEFluidCompartment(const std::string &name, Logger *logger) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protected |
SEGasCompartment(const char *name, Logger *logger) | biogears::SEGasCompartment | protected |
SEGasCompartment(const std::string &name, Logger *logger) | biogears::SEGasCompartment | protected |
StateChange() override | biogears::SEGasCompartment | virtual |
Unload() override | biogears::SEGasCompartment | virtual |
Unload(CDM::GasCompartmentData &data) | biogears::SEGasCompartment | protectedvirtual |
SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >::Unload(CDM::FluidCompartmentData &data) | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | protectedvirtual |
biogears::SECompartment::Unload(CDM::CompartmentData &data) | biogears::SECompartment | protectedvirtual |
Warning(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
Warning(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
Warning(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
ZeroSubstanceQuantities() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
~Loggable() | biogears::Loggable | virtual |
~SECompartment() override | biogears::SECompartment | virtual |
~SEFluidCompartment() | biogears::SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity > | virtual |
~SEGasCompartment() | biogears::SEGasCompartment | virtual |