| BioGears class | biogears::DiffusionCalculator | friend |
| BioGearsEngineTest class | biogears::DiffusionCalculator | friend |
| CalciumPump(double intraCa_M) | biogears::DiffusionCalculator | private |
| CalculateActiveIonDiffusion(DiffusionCompartmentSet &cmptSet) | biogears::DiffusionCalculator | protected |
| CalculateFacilitatedDiffusion(DiffusionCompartmentSet &cmptSet, const SESubstance &sub, double combinedCoefficient_g_Per_s) | biogears::DiffusionCalculator | protected |
| CalculateLinearDiffusionMethods() | biogears::DiffusionCalculator | |
| CalculateMacromoleculeDiffusion(DiffusionCompartmentSet &cmptSet, const SESubstance &sub) | biogears::DiffusionCalculator | protected |
| CalculateNonLinearDiffusionMethods() | biogears::DiffusionCalculator | |
| CalculatePassiveLymphDiffusion(SELiquidCompartment &source, SELiquidCompartment &target, const SESubstance &sub) | biogears::DiffusionCalculator | protected |
| CalculatePerfusionLimitedDiffusion(DiffusionCompartmentSet &cmptSet, const SESubstance &sub, double partitionCoeff) | biogears::DiffusionCalculator | protected |
| ClearConcentrations() | biogears::DiffusionCalculator | protected |
| Debug(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Debug(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Debug(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| DiffusionCalculator(BioGears &bg) | biogears::DiffusionCalculator | protected |
| DistributeMassbyMassWeighted(SELiquidCompartment &cmpt, const SESubstance &sub, double mass, const MassUnit &unit) | biogears::DiffusionCalculator | private |
| DistributeMassbyVolumeWeighted(SELiquidCompartment &cmpt, const SESubstance &sub, double mass, const MassUnit &unit) | biogears::DiffusionCalculator | private |
| empty | biogears::Loggable | static |
| empty_cStr | biogears::Loggable | static |
| Error(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Error(const std::string msg, const std::string origin=empty) const | biogears::Loggable | protectedvirtual |
| Error(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Fatal(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| GetDiffusionSets() | biogears::DiffusionCalculator | inline |
| GetFacilitatedDiffusionSubstances() | biogears::DiffusionCalculator | inline |
| GetInstantDiffusionSubstances() | biogears::DiffusionCalculator | inline |
| GetLogger() const | biogears::Loggable | virtual |
| GetSimpleDiffusionSubstances() | biogears::DiffusionCalculator | inline |
| Info(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Info(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Info(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Initialize(SESubstanceManager &subMgr) | biogears::DiffusionCalculator | |
| Loggable() | biogears::Loggable | |
| Loggable(Logger *log) | biogears::Loggable | |
| m_data | biogears::DiffusionCalculator | protected |
| m_DiffusionSets | biogears::DiffusionCalculator | private |
| m_dt_s | biogears::DiffusionCalculator | private |
| m_FacilitatedDiffusionSubstances | biogears::DiffusionCalculator | private |
| m_InstantDiffusionSubstances | biogears::DiffusionCalculator | private |
| m_InstantSubConcentrations | biogears::DiffusionCalculator | private |
| m_InstantSubMatrices | biogears::DiffusionCalculator | private |
| m_Logger | biogears::Loggable | protected |
| m_PermeabilityCoefficients | biogears::DiffusionCalculator | private |
| m_SimpleDiffusionSubstances | biogears::DiffusionCalculator | private |
| m_SimpleSubConcentrations | biogears::DiffusionCalculator | private |
| m_SimpleSubMatrices | biogears::DiffusionCalculator | private |
| m_TissueMasses_g | biogears::DiffusionCalculator | private |
| m_VolumeRatiosExtraIntra | biogears::DiffusionCalculator | private |
| m_VolumeRatiosVascularExtra | biogears::DiffusionCalculator | private |
| make_unique(BioGears &bg) -> std::unique_ptr< DiffusionCalculator > | biogears::DiffusionCalculator | protectedstatic |
| SetDiffusionState() | biogears::DiffusionCalculator | |
| SodiumPotassiumPump(double intraNa_mM, double extraNa_mM, double extraK_mM, double potential_V) | biogears::DiffusionCalculator | private |
| Warning(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Warning(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Warning(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| ~DiffusionCalculator()=default | biogears::DiffusionCalculator | |
| ~Loggable() | biogears::Loggable | virtual |
