biogears::BioGearsSubstances Member List

This is the complete list of members for biogears::BioGearsSubstances, including all inherited members.

AddActiveCompound(SESubstanceCompound &compound)biogears::SESubstanceManagervirtual
AddActiveSubstance(SESubstance &substance)biogears::BioGearsSubstancesvirtual
AddCompound(SESubstanceCompound &compound)biogears::SESubstanceManagervirtual
AddSubstance(SESubstance &substance)biogears::SESubstanceManagervirtual
BioGearsEngineTest classbiogears::BioGearsSubstancesfriend
BioGearsSubstances(BioGears &data)biogears::BioGearsSubstances
CalculateGenericClearance(double volumeCleared_mL, SELiquidCompartment &cmpt, SESubstance &sub, SEScalarMass *cleared=nullptr)biogears::BioGearsSubstances
CalculateGenericClearance(double volumeCleared_mL, SETissueCompartment &cmpt, SESubstance &sub, SEScalarMass *cleared=nullptr)biogears::BioGearsSubstances
CalculateGenericExcretion(double VascularFlow_mL_Per_s, SETissueCompartment &cmpt, SESubstance &sub, double FractionExcreted, double timestep_s, SEScalarMass *excreted=nullptr)biogears::BioGearsSubstances
Clear()biogears::BioGearsSubstancesvirtual
Debug(const char *msg, const char *origin="") const biogears::Loggableprotectedvirtual
Debug(const std::string &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
Debug(std::ostream &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
emptybiogears::Loggablestatic
empty_cStrbiogears::Loggablestatic
Error(const char *msg, const char *origin="") const biogears::Loggableprotectedvirtual
Error(const std::string msg, const std::string origin=empty) const biogears::Loggableprotectedvirtual
Error(std::ostream &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
Fatal(const char *msg, const char *origin="") const biogears::Loggableprotectedvirtual
Fatal(const std::string &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
Fatal(std::ostream &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
GetActiveCompounds() const biogears::SESubstanceManagervirtual
GetActiveDrugs() const biogears::SESubstanceManagervirtual
GetActiveGases() const biogears::SESubstanceManagervirtual
GetActiveLiquids() const biogears::SESubstanceManagervirtual
GetActiveSubstances() const biogears::SESubstanceManagervirtual
GetAlbumin()biogears::BioGearsSubstancesinline
GetAminoAcids()biogears::BioGearsSubstancesinline
GetAntigen_A()biogears::BioGearsSubstancesinline
GetAntigen_B()biogears::BioGearsSubstancesinline
GetBicarbonate()biogears::BioGearsSubstancesinline
GetCalcium()biogears::BioGearsSubstancesinline
GetChloride()biogears::BioGearsSubstancesinline
GetCO()biogears::BioGearsSubstancesinline
GetCO2()biogears::BioGearsSubstancesinline
GetCompound(const char *name) const biogears::SESubstanceManagervirtual
GetCompound(const std::string &name) const biogears::SESubstanceManagervirtual
GetCompounds() const biogears::SESubstanceManagervirtual
GetCreatinine()biogears::BioGearsSubstancesinline
GetEpi()biogears::BioGearsSubstancesinline
GetGlobulin()biogears::BioGearsSubstancesinline
GetGlucagon()biogears::BioGearsSubstancesinline
GetGlucose()biogears::BioGearsSubstancesinline
GetHb()biogears::BioGearsSubstancesinline
GetHbCO()biogears::BioGearsSubstancesinline
GetHbCO2()biogears::BioGearsSubstancesinline
GetHbO2()biogears::BioGearsSubstancesinline
GetHbO2CO2()biogears::BioGearsSubstancesinline
GetHCO3()biogears::BioGearsSubstancesinline
GetInsulin()biogears::BioGearsSubstancesinline
GetKetones()biogears::BioGearsSubstancesinline
GetLactate()biogears::BioGearsSubstancesinline
GetLogger() const biogears::Loggablevirtual
GetN2()biogears::BioGearsSubstancesinline
GetO2()biogears::BioGearsSubstancesinline
GetPlatelets()biogears::BioGearsSubstancesinline
GetPotassium()biogears::BioGearsSubstancesinline
GetRBC()biogears::BioGearsSubstancesinline
GetSizeIndependentDepositionEfficencyCoefficient(SESubstance &substance)biogears::BioGearsSubstances
GetSodium()biogears::BioGearsSubstancesinline
GetSubstance(const char *name) const biogears::SESubstanceManagervirtual
GetSubstance(const std::string &name) const biogears::SESubstanceManagervirtual
GetSubstanceMass(SESubstance &, const std::vector< SELiquidCompartment * > &, const MassUnit &unit)biogears::BioGearsSubstances
GetSubstanceMass(SESubstance &, const std::vector< SETissueCompartment * > &, const MassUnit &unit)biogears::BioGearsSubstances
GetSubstances() const biogears::SESubstanceManagervirtual
GetTriacylglycerol()biogears::BioGearsSubstancesinline
GetUrea()biogears::BioGearsSubstancesinline
GetWBC()biogears::BioGearsSubstancesinline
Info(const char *msg, const char *origin="") const biogears::Loggableprotectedvirtual
Info(const std::string &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
Info(std::ostream &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
InitializeBloodGases(SETissueCompartment &tissue, SELiquidCompartment &vascular)biogears::BioGearsSubstancesprotectedvirtual
InitializeBloodGases(SELiquidCompartment &cmpt, double Hb_total_mM, double O2_sat, double O2_mmol_Per_L, double CO2_sat, double CO2_mmol_Per_L, double HCO3_mmol_Per_L, double pH, bool distribute=true)biogears::BioGearsSubstancesprotectedvirtual
InitializeGasCompartments()biogears::BioGearsSubstancesprotectedvirtual
InitializeLiquidCompartmentGases()biogears::BioGearsSubstancesprotectedvirtual
InitializeLiquidCompartmentNonGases()biogears::BioGearsSubstancesprotectedvirtual
InitializeSubstances()biogears::BioGearsSubstancesvirtual
IsActive(const SESubstance &sub) const biogears::BioGearsSubstancesvirtual
biogears::SESubstanceManager::IsActive(const SESubstanceCompound &compound) const biogears::SESubstanceManagervirtual
LoadSubstanceDirectory()biogears::BioGearsSubstancesvirtual
Loggable()biogears::Loggable
Loggable(Logger *log)biogears::Loggable
m_ActiveCompoundsbiogears::SESubstanceManagerprotected
m_ActiveDrugsbiogears::SESubstanceManagerprotected
m_ActiveGasesbiogears::SESubstanceManagerprotected
m_ActiveLiquidsbiogears::SESubstanceManagerprotected
m_ActiveSubstancesbiogears::SESubstanceManagerprotected
m_albuminbiogears::BioGearsSubstancesprotected
m_aminoAcidsbiogears::BioGearsSubstancesprotected
m_AntigenAbiogears::BioGearsSubstancesprotected
m_AntigenBbiogears::BioGearsSubstancesprotected
m_calciumbiogears::BioGearsSubstancesprotected
m_chloridebiogears::BioGearsSubstancesprotected
m_CObiogears::BioGearsSubstancesprotected
m_CO2biogears::BioGearsSubstancesprotected
m_Compoundsbiogears::SESubstanceManagerprotected
m_creatininebiogears::BioGearsSubstancesprotected
m_databiogears::BioGearsSubstancesprotected
m_epibiogears::BioGearsSubstancesprotected
m_globulinbiogears::BioGearsSubstancesprotected
m_glucagonbiogears::BioGearsSubstancesprotected
m_glucosebiogears::BioGearsSubstancesprotected
m_Hbbiogears::BioGearsSubstancesprotected
m_HbCObiogears::BioGearsSubstancesprotected
m_HbCO2biogears::BioGearsSubstancesprotected
m_HbO2biogears::BioGearsSubstancesprotected
m_HbO2CO2biogears::BioGearsSubstancesprotected
m_HCO3biogears::BioGearsSubstancesprotected
m_insulinbiogears::BioGearsSubstancesprotected
m_isCOActivebiogears::BioGearsSubstancesprotected
m_ketonesbiogears::BioGearsSubstancesprotected
m_lactatebiogears::BioGearsSubstancesprotected
m_Loggerbiogears::Loggableprotected
m_N2biogears::BioGearsSubstancesprotected
m_O2biogears::BioGearsSubstancesprotected
m_plateletsbiogears::BioGearsSubstancesprotected
m_potassiumbiogears::BioGearsSubstancesprotected
m_RBCbiogears::BioGearsSubstancesprotected
m_SIDECoefficientsbiogears::BioGearsSubstancesprotected
m_sodiumbiogears::BioGearsSubstancesprotected
m_Substancesbiogears::SESubstanceManagerprotected
m_triacylglycerolbiogears::BioGearsSubstancesprotected
m_ureabiogears::BioGearsSubstancesprotected
m_WBCbiogears::BioGearsSubstancesprotected
ProbeBloodGases(SELiquidCompartment &cmpt, const std::string &prefix="")biogears::BioGearsSubstances
ReadSubstanceFile(const char *xmlFile)biogears::SESubstanceManagervirtual
ReadSubstanceFile(const std::string &xmlFile)biogears::SESubstanceManagervirtual
RemoveActiveCompound(SESubstanceCompound &compound)biogears::SESubstanceManagervirtual
RemoveActiveCompounds(const std::vector< SESubstanceCompound * > &compounds)biogears::SESubstanceManagervirtual
RemoveActiveSubstance(const SESubstance &substance)biogears::SESubstanceManagervirtual
RemoveActiveSubstances(const std::vector< SESubstance * > &substances)biogears::SESubstanceManagervirtual
RemoveActiveSubstances()biogears::SESubstanceManagervirtual
Reset()biogears::SESubstanceManagervirtual
SESubstanceManager(Logger *logger)biogears::SESubstanceManager
SetLiquidCompartmentNonGasesForStarvation(double time_h)biogears::BioGearsSubstances
SetSubstanceConcentration(SESubstance &, const std::vector< SELiquidCompartment * > &, const SEScalarMassPerVolume &concentration)biogears::BioGearsSubstancesprotected
SetSubstanceConcentration(SESubstance &, const std::vector< SETissueCompartment * > &, const SEScalarMassPerVolume &concentration)biogears::BioGearsSubstancesprotected
SetSubstanceConcentration(SESubstance &, const std::vector< SETissueCompartment * > &, const SEScalarMassPerVolume &extracellular, const SEScalarMassPerVolume &intracellular)biogears::BioGearsSubstancesprotected
SetSubstanceMolarity(SESubstance &, const std::vector< SELiquidCompartment * > &, const SEScalarAmountPerVolume &molarity)biogears::BioGearsSubstancesprotected
SetSubstanceMolarity(SESubstance &, const std::vector< SETissueCompartment * > &, const SEScalarAmountPerVolume &molarity)biogears::BioGearsSubstancesprotected
SetSubstanceMolarity(SESubstance &, const std::vector< SETissueCompartment * > &, const SEScalarAmountPerVolume &extracellular, const SEScalarAmountPerVolume &intracellular)biogears::BioGearsSubstancesprotected
SetSubstanceMolarity(SESubstance &, const SEScalarAmountPerVolume &extracellular, const SEScalarAmountPerVolume &intracellular)biogears::BioGearsSubstancesprotected
Warning(const char *msg, const char *origin="") const biogears::Loggableprotectedvirtual
Warning(const std::string &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
Warning(std::ostream &msg, const std::string &origin=empty) const biogears::Loggableprotectedvirtual
WriteBloodGases()biogears::BioGearsSubstances
WritePulmonaryGases()biogears::BioGearsSubstances
~BioGearsSubstances()=defaultbiogears::BioGearsSubstancesvirtual
~Loggable()biogears::Loggablevirtual
~SESubstanceManager()biogears::SESubstanceManagervirtual